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Crystal Structure of Homodimeric Androgen Receptor Ligand-Binding Domain bound to DHT and LxxLL peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1 M HEPES
1.35 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.71 54.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.09 α = 90 b = 91.01 β = 90.07 c = 157.23 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Channel-cut Si(111) + KB focusing mirrors 2015-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97934 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 78.61 99.6 0.073 8.9 3.1 69531
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.27 99.2 0.456 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1T7T 2.15 157.23 66522 3444 99.77 0.2032 0.20116 0.1996 0.24312 0.2424 RANDOM 40.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 -0.16 -0.18 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.513 r_dihedral_angle_3_deg 17.106 r_dihedral_angle_4_deg 16.584 r_dihedral_angle_1_deg 6.595 r_long_range_B_refined 6.389 r_scbond_it 3.394 r_mcangle_it 2.972 r_angle_refined_deg 2.488 r_mcbond_it 2.028 r_chiral_restr 0.173
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.513 r_dihedral_angle_3_deg 17.106 r_dihedral_angle_4_deg 16.584 r_dihedral_angle_1_deg 6.595 r_long_range_B_refined 6.389 r_scbond_it 3.394 r_mcangle_it 2.972 r_angle_refined_deg 2.488 r_mcbond_it 2.028 r_chiral_restr 0.173 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8546 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 174
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling Coot model building