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Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 1.7M sodium potassium phosphate, 20%(v/v) Glycerol as cryoprotectant
Crystal Properties Matthews coefficient Solvent content 3.86 68.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.167 α = 90 b = 133.673 β = 90 c = 141.111 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 270 2009-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-17A 1.0000 Photon Factory BL-17A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.101 97.04 100 0.112 14.1 7.1 10345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.101 3.27 100 0.498 1.4 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2EVA 3.101 97.04 9823 497 99.73 0.183 0.1814 0.1804 0.2148 0.2125 RANDOM 62.745
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.13 -0.01 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.281 r_dihedral_angle_4_deg 17 r_dihedral_angle_3_deg 15.415 r_dihedral_angle_1_deg 5.226 r_mcangle_it 4.395 r_scbond_it 2.571 r_mcbond_it 2.453 r_angle_refined_deg 1.237 r_chiral_restr 0.08 r_bond_refined_d 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.281 r_dihedral_angle_4_deg 17 r_dihedral_angle_3_deg 15.415 r_dihedral_angle_1_deg 5.226 r_mcangle_it 4.395 r_scbond_it 2.571 r_mcbond_it 2.453 r_angle_refined_deg 1.237 r_chiral_restr 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2303 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms 32
Software Software Software Name Purpose XDS data processing SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction