☰ Navigation Tabs
Crystal structure of human TAK1/TAB1 fusion protein in complex with ligand 11c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EVA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.7 294 1.7M sodium potassium phosphate, 20%(v/v) Glycerol as cryoprotectant
Crystal Properties Matthews coefficient Solvent content 3.86 68.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.009 α = 90 b = 133.796 β = 90 c = 141.374 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210r 2009-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 97.18 97.8 0.067 11.6 7.1 36658
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 87.9 0.542 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2EVA 2 97.18 34824 1822 97.82 0.1965 0.1952 0.1953 0.2213 0.2213 RANDOM 40.658
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.687 r_dihedral_angle_4_deg 21.223 r_dihedral_angle_3_deg 12.98 r_dihedral_angle_1_deg 5.841 r_mcangle_it 3.875 r_scbond_it 2.639 r_mcbond_it 2.291 r_angle_refined_deg 1.353 r_chiral_restr 0.086 r_bond_refined_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.687 r_dihedral_angle_4_deg 21.223 r_dihedral_angle_3_deg 12.98 r_dihedral_angle_1_deg 5.841 r_mcangle_it 3.875 r_scbond_it 2.639 r_mcbond_it 2.291 r_angle_refined_deg 1.353 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2314 Nucleic Acid Atoms Solvent Atoms 186 Heterogen Atoms 34
Software Software Software Name Purpose HKL-2000 data processing HKL-2000 data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction