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Complex of PKA with the bisubstrate protein kinase inhibitor ARC-1416
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277.15 18% PEG3350, 0.2M LiSO4
Crystal Properties Matthews coefficient Solvent content 2.49 50.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.023 α = 90 b = 127.023 β = 90 c = 89.631 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.8 0.336 6.66 7.4 13597
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.67 2.798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 50 12943 682 99.75 0.24049 0.23678 0.2413 0.30895 0.3058 RANDOM 62.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.03 0.06 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.955 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_4_deg 12.898 r_long_range_B_refined 6.05 r_long_range_B_other 6.049 r_dihedral_angle_1_deg 5.572 r_mcangle_it 3.567 r_mcangle_other 3.566 r_scangle_other 3.116 r_mcbond_it 2.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.955 r_dihedral_angle_3_deg 14.693 r_dihedral_angle_4_deg 12.898 r_long_range_B_refined 6.05 r_long_range_B_other 6.049 r_dihedral_angle_1_deg 5.572 r_mcangle_it 3.567 r_mcangle_other 3.566 r_scangle_other 3.116 r_mcbond_it 2.081 r_mcbond_other 2.081 r_scbond_it 1.744 r_scbond_other 1.744 r_angle_refined_deg 1.253 r_angle_other_deg 0.875 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2897 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing