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Swirm domain of human Lsd1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 293 0.1 M MgCl2, 0.1 M Tris, 25%(w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.76 29.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.17 α = 90 b = 49.97 β = 90 c = 48.85 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS EIGER X 4M 2005-08-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.9777, 0.979, 0.9793, 0.9649 CHESS F2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.8 4.3 3.8 28163
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 48.85 25553 1358 95.12 0.16108 0.15932 0.159 0.19405 0.1941 RANDOM 21.276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.47 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.529 r_dihedral_angle_4_deg 21.789 r_dihedral_angle_3_deg 13.142 r_long_range_B_refined 8.715 r_long_range_B_other 8.505 r_scangle_other 7.994 r_scbond_other 6.088 r_scbond_it 6.087 r_dihedral_angle_1_deg 5.032 r_mcangle_other 3.725
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.529 r_dihedral_angle_4_deg 21.789 r_dihedral_angle_3_deg 13.142 r_long_range_B_refined 8.715 r_long_range_B_other 8.505 r_scangle_other 7.994 r_scbond_other 6.088 r_scbond_it 6.087 r_dihedral_angle_1_deg 5.032 r_mcangle_other 3.725 r_mcangle_it 3.702 r_mcbond_it 2.891 r_mcbond_other 2.773 r_angle_refined_deg 1.473 r_angle_other_deg 0.988 r_chiral_restr 0.085 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1397 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing