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Open state of P450cam after soaking in camphor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 100 mM Bis-Tris
10-22 % PEG 8000
200 mM KCl
Crystal Properties Matthews coefficient Solvent content 2.39 48.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.54 α = 90 b = 73.8 β = 90 c = 90.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.0 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 57.128 99.7 0.062 0.07 0.031 13.4 4.5 66465 66465
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.61 100 0.426 1.8 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3L62 1.53 34.15 63035 3369 99.57 0.1808 0.1795 0.1778 0.2052 0.204 RANDOM 22.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.534 r_dihedral_angle_3_deg 14.57 r_dihedral_angle_4_deg 11.96 r_dihedral_angle_1_deg 5.942 r_scangle_it 5.857 r_scbond_it 3.794 r_angle_refined_deg 2.733 r_mcangle_it 2.588 r_mcbond_it 1.608 r_chiral_restr 0.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.534 r_dihedral_angle_3_deg 14.57 r_dihedral_angle_4_deg 11.96 r_dihedral_angle_1_deg 5.942 r_scangle_it 5.857 r_scbond_it 3.794 r_angle_refined_deg 2.733 r_mcangle_it 2.588 r_mcbond_it 1.608 r_chiral_restr 0.186 r_bond_refined_d 0.032 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3111 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 65
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction