5IJ4

Solution structure of AN1-type zinc finger domain from Cuz1 (Cdc48 associated ubiquitin-like/zinc-finger protein-1)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY1.0 mM [U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
23D 1H-13C NOESY0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
33D HNCA0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
43D HN(CO)CA0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
53D HNCO0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
63D HN(CA)CO0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
73D HNCACB0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
83D HN(COCA)CB0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
93D C(CO)NH0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
103D H(CCO)NH0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
113D HCCH-TOCSY0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
122D NOESY0.85 mM cuz1, 5 mM [U-2H] Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM [U-2H] DTT100% D2O50 mM7.51 atm25Bruker AVANCE III 750
132D TOCSY0.85 mM cuz1, 5 mM [U-2H] Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM [U-2H] DTT100% D2O50 mM7.51 atm25Bruker AVANCE III 750
142D 1H-15N HSQC0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
152D 1H-13C HSQC0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
162D 1H-13C HSQC aromatic0.7 mM [U-100% 13C; U-100% 15N] cuz1, 5 mM Tris, 50 mM NaCl, 0.2 mM ZnCl2, 1 mM DTT90% H2O/10% D2O50 mM7.51 atm25Agilent DD2 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1AgilentDD2600
2BrukerAVANCE III750
NMR Refinement
MethodDetailsSoftware
simulated annealingsimulated annealing with torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANAGuntert, Mumenthaler and Wuthrich
2chemical shift assignmentCARAKeller and Wuthrich
3peak pickingCARAKeller and Wuthrich
4processinghmsISTHyberts, S.G and Wagner, G
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6refinementCYANAGuntert, Mumenthaler and Wuthrich