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Crystal structure apo CDK2/cyclin A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277.15 100mM HEPES, 5mM DTT, 0.5 mM Kcl, 875mM ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 4.15 70.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 186.574 α = 90 b = 186.574 β = 90 c = 213.07 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.61 48.07 100 11.4 2 63451
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.61 48.07 63451 3312 99.97 0.18986 0.18743 0.194 0.23632 0.2358 RANDOM 60.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.3 0.6 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.246 r_dihedral_angle_3_deg 18.394 r_dihedral_angle_4_deg 17.738 r_long_range_B_other 13.671 r_long_range_B_refined 13.667 r_scangle_other 11.429 r_mcangle_other 9.914 r_mcangle_it 9.913 r_scbond_it 8.108 r_scbond_other 8.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.246 r_dihedral_angle_3_deg 18.394 r_dihedral_angle_4_deg 17.738 r_long_range_B_other 13.671 r_long_range_B_refined 13.667 r_scangle_other 11.429 r_mcangle_other 9.914 r_mcangle_it 9.913 r_scbond_it 8.108 r_scbond_other 8.107 r_dihedral_angle_1_deg 7.609 r_mcbond_it 7.21 r_mcbond_other 7.207 r_angle_refined_deg 1.9 r_angle_other_deg 1.089 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8918 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing