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The structure of microsomal glutathione transferase 1 in complex with Meisenheimer complex
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.8 α = 90 b = 81.8 β = 90 c = 100 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B ELECTRON CRYSTALLOGRAPHY FREE R-VALUE 3.5 10 5539 175 72.4 0.28287 0.28144 0.31055 RANDOM 19.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -34.57 -34.57 69.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.785 r_dihedral_angle_4_deg 25.946 r_dihedral_angle_3_deg 22.525 r_dihedral_angle_1_deg 10.793 r_angle_refined_deg 3.084 r_mcangle_it 0.921 r_mcbond_it 0.696 r_scangle_it 0.628 r_scbond_it 0.412 r_chiral_restr 0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.785 r_dihedral_angle_4_deg 25.946 r_dihedral_angle_3_deg 22.525 r_dihedral_angle_1_deg 10.793 r_angle_refined_deg 3.084 r_mcangle_it 0.921 r_mcbond_it 0.696 r_scangle_it 0.628 r_scbond_it 0.412 r_chiral_restr 0.25 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Software Software Software Name Purpose REFMAC refinement
Sample The structure of microsomal glutathione transferase 1 in complex with the Meisenheimer complex
Specimen Preparation Sample Aggregation State 2D ARRAY Vitrification Instrument Cryogen Name NITROGEN Sample Vitrification Details Embedding Material trehalose Embedding Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) 3.5 Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 2D CRYSTAL Space Group Name P 6 Length a 81.8 Length b 81.8 Angle Gamma 120
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TVIPS TEMCAM-F415 (4k x 4k) Electron Dose (electrons/Å**2) 1
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL 2100F Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT REFMAC 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE