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Alcohol oxidase from Pichia pastoris
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NNE experimental model PDB 1GAL experimental model PDB 3FIM
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK I Cryogen Name ETHANE Sample Vitrification Details blot for 11 seconds before plunging
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 49559 Reported Resolution (Å) 3.37 Resolution Method FSC 0.143 CUT-OFF Other Details RELION was used for the reconstruction Refinement Type Symmetry Type POINT Point Symmetry D4 Space Group Name Length a 1 Length b 1 Length c 1 Angle Alpha 90 Angle Beta 90 Angle Gamma 90
Map-Model Fitting and Refinement Id 1 (3NNE, 1GAL, 3FIM) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 147 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 51
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL 3200FSC Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 4.2 Imaging Mode BRIGHT FIELD Specimen Holder Model JEOL 3200FSC CRYOHOLDER Nominal Magnification 30000 Calibrated Magnification 43860 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Data was collected manually
EM Software Task Software Package Version PARTICLE SELECTION EMAN CTF CORRECTION RELION 1.3 MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT RELION 1.3 FINAL EULER ASSIGNMENT RELION 1.3 CLASSIFICATION RELION 1.3 RECONSTRUCTION RELION 1.3 MODEL REFINEMENT Coot MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY CTF was determined by CTFFIND3 inside the RELION software 56544