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Recombinant bovine beta-lactoglobulin variant L1A/I2S with endogenous ligand (sBlgB#1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 1.34 M sodium citrate in 0.1 M Tris pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.51 51.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.486 α = 90 b = 53.486 β = 90 c = 111.039 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD AGILENT ATLAS CCD 2013-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 13.75 98.9 0.072 8.4 2.8 6699
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.62 98.8 0.348 1.8 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1BSY 2.5 13.75 5367 1293 98.29 0.21418 0.20076 0.2079 0.27232 0.2721 RANDOM 37.435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.263 r_dihedral_angle_4_deg 20.246 r_dihedral_angle_3_deg 16.483 r_dihedral_angle_1_deg 6.023 r_long_range_B_refined 5.002 r_long_range_B_other 4.964 r_mcangle_it 3.213 r_mcangle_other 3.211 r_scangle_other 2.662 r_mcbond_it 1.807
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.263 r_dihedral_angle_4_deg 20.246 r_dihedral_angle_3_deg 16.483 r_dihedral_angle_1_deg 6.023 r_long_range_B_refined 5.002 r_long_range_B_other 4.964 r_mcangle_it 3.213 r_mcangle_other 3.211 r_scangle_other 2.662 r_mcbond_it 1.807 r_mcbond_other 1.806 r_scbond_it 1.51 r_scbond_other 1.509 r_angle_refined_deg 1.116 r_angle_other_deg 0.715 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1239 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction SCALA data scaling PHASER phasing