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Bacterial sodium channel neck 3G mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LTO PDB entry 4LTO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 277 30% PEG400, 20 mM MES, pH 5.4
Crystal Properties Matthews coefficient Solvent content 6.35 80.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.31 α = 90 b = 153.35 β = 90 c = 165.81 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 CCD ADSC QUANTUM 315r 2013-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1158 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 50 99.86 0.162 8.91 14 19966
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB entry 4LTO 3.7 15 17894 958 98.2 0.2798 0.27844 0.2726 0.30409 0.296 RANDOM 299.182
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.76 -4.75 13.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_long_range_B_refined 29.339 r_long_range_B_other 29.336 r_dihedral_angle_3_deg 21.44 r_mcangle_it 14.147 r_mcangle_other 14.145 r_dihedral_angle_4_deg 14.144 r_scangle_other 12.757 r_dihedral_angle_1_deg 8.631 r_mcbond_it 8.416
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_long_range_B_refined 29.339 r_long_range_B_other 29.336 r_dihedral_angle_3_deg 21.44 r_mcangle_it 14.147 r_mcangle_other 14.145 r_dihedral_angle_4_deg 14.144 r_scangle_other 12.757 r_dihedral_angle_1_deg 8.631 r_mcbond_it 8.416 r_mcbond_other 8.412 r_scbond_it 7.241 r_scbond_other 7.239 r_angle_other_deg 3.805 r_angle_refined_deg 1.429 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_bond_other_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3739 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing