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Hexameric HIV-1 CA in complex with dATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H4E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 290 PEG550MME (13-14%), KSCN (0.15M), TRIS (0.1M, pH 8.5), 10mM dATP
Crystal Properties Matthews coefficient Solvent content 2.65 53.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.81 α = 90 b = 90.81 β = 90 c = 56.68 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2014-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 45.98 94.9 0.112 0.077 0.993 8.2 2.9 16259
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.08 69.1 0.551 0.418 0.42 1.9 2.4 877
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3H4E 2.04 45.98 15488 769 95.42 0.2373 0.2359 0.2317 0.2632 0.2491 RANDOM 26.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.09 0.19 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.805 r_dihedral_angle_4_deg 13.086 r_dihedral_angle_3_deg 10.603 r_dihedral_angle_1_deg 4.762 r_mcangle_it 2.957 r_mcbond_it 1.763 r_mcbond_other 1.756 r_angle_refined_deg 0.991 r_angle_other_deg 0.864 r_chiral_restr 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.805 r_dihedral_angle_4_deg 13.086 r_dihedral_angle_3_deg 10.603 r_dihedral_angle_1_deg 4.762 r_mcangle_it 2.957 r_mcbond_it 1.763 r_mcbond_other 1.756 r_angle_refined_deg 0.991 r_angle_other_deg 0.864 r_chiral_restr 0.05 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1551 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 13
Software Software Software Name Purpose MAR345dtb data collection Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction iMOSFLM data reduction