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Interaction between vitamin D receptor and coactivator peptide SRC2-3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 MOP-Na, Na-Formate, PEG 4000, Ethleneglycol
Crystal Properties Matthews coefficient Solvent content 2.18 43.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 155.77 α = 90 b = 42.88 β = 95.83 c = 42.21 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.00000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 41.99 78 73.3 2 6752
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 41.99 6283 469 77.23 0.23966 0.23901 0.2363 0.24834 0.2641 RANDOM 42.152
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.61 -2.26 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.165 r_dihedral_angle_3_deg 18.089 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_1_deg 5.049 r_long_range_B_refined 1.747 r_long_range_B_other 1.745 r_angle_refined_deg 1.542 r_mcangle_it 1.156 r_mcangle_other 1.155 r_angle_other_deg 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.165 r_dihedral_angle_3_deg 18.089 r_dihedral_angle_4_deg 16.696 r_dihedral_angle_1_deg 5.049 r_long_range_B_refined 1.747 r_long_range_B_other 1.745 r_angle_refined_deg 1.542 r_mcangle_it 1.156 r_mcangle_other 1.155 r_angle_other_deg 1.05 r_scangle_other 0.967 r_mcbond_other 0.749 r_mcbond_it 0.748 r_scbond_it 0.622 r_scbond_other 0.622 r_chiral_restr 0.075 r_bond_refined_d 0.015 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1993 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement