☰ Navigation Tabs
Structure of two TTTA repeats
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 1.0 mM DNA (5'-D(*TP*TP*TP*AP*TP*TP*TP*A)-3'), 10 mM sodium phosphate, 0.1 mM DSS 100% D2O 0.02 M 7.0 1 atm 278 Bruker AVANCE III 700 2 2D DQF-COSY 1.0 mM DNA (5'-D(*TP*TP*TP*AP*TP*TP*TP*A)-3'), 10 mM sodium phosphate, 0.1 mM DSS 100% D2O 0.02 M 7.0 1 atm 278 Bruker AVANCE II 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 700 2 Bruker AVANCE II 500
NMR Refinement Method Details Software restrained molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 1000 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 2 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman