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Glycoside hydrolase B with product
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100mM PCB buffer pH7.0, 25% (w/v) PEG 1500, 50mM GlcN
Crystal Properties Matthews coefficient Solvent content 2.16 43.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.585 α = 90 b = 119.991 β = 98.66 c = 85.902 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD RAYONIX MX300HE 2016-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 50 92.5 20.8 2.9 370867
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.27 20 352051 18716 92.41 0.13251 0.13026 0.1314 0.17543 0.1767 RANDOM 14.298
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.56 0.69 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_sphericity_free 30.947 r_dihedral_angle_4_deg 19.873 r_sphericity_bonded 12.735 r_dihedral_angle_3_deg 12.248 r_dihedral_angle_1_deg 6.912 r_scangle_other 5.285 r_rigid_bond_restr 5.267 r_long_range_B_refined 4.906 r_long_range_B_other 4.906
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.097 r_sphericity_free 30.947 r_dihedral_angle_4_deg 19.873 r_sphericity_bonded 12.735 r_dihedral_angle_3_deg 12.248 r_dihedral_angle_1_deg 6.912 r_scangle_other 5.285 r_rigid_bond_restr 5.267 r_long_range_B_refined 4.906 r_long_range_B_other 4.906 r_scbond_it 4.691 r_scbond_other 4.691 r_mcangle_other 2.482 r_mcangle_it 2.477 r_angle_refined_deg 2.444 r_mcbond_it 2.044 r_mcbond_other 2.034 r_angle_other_deg 1.216 r_chiral_restr 0.169 r_bond_refined_d 0.028 r_gen_planes_refined 0.015 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12794 Nucleic Acid Atoms Solvent Atoms 1282 Heterogen Atoms 172
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing