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Crystal structure of branching enzyme L541A mutant from Cyanothece sp. ATCC 51142 in complex with maltoheptaose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 magnesium chloride, ethanol, HEPES-NaOH
Crystal Properties Matthews coefficient Solvent content 4.47 72.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.895 α = 90 b = 133.895 β = 90 c = 183.141 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2014-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 100 0.05 61.6 14.5 112527
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 0.279 9.7 14.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 45.83 104979 5540 98.23 0.17411 0.17243 0.1837 0.20566 0.2134 RANDOM 31.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.889 r_dihedral_angle_4_deg 17.579 r_dihedral_angle_3_deg 13.798 r_long_range_B_refined 7.543 r_long_range_B_other 7.402 r_dihedral_angle_1_deg 6.909 r_scangle_other 6.167 r_scbond_it 4.366 r_scbond_other 4.366 r_mcangle_it 3.938
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.889 r_dihedral_angle_4_deg 17.579 r_dihedral_angle_3_deg 13.798 r_long_range_B_refined 7.543 r_long_range_B_other 7.402 r_dihedral_angle_1_deg 6.909 r_scangle_other 6.167 r_scbond_it 4.366 r_scbond_other 4.366 r_mcangle_it 3.938 r_mcangle_other 3.938 r_mcbond_it 3.196 r_mcbond_other 3.194 r_angle_refined_deg 2.208 r_angle_other_deg 1.08 r_chiral_restr 0.152 r_bond_refined_d 0.024 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6270 Nucleic Acid Atoms Solvent Atoms 611 Heterogen Atoms 315
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing