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Crystal Structure of Puumala virus Gn glycoprotein ectodomain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 30% W/V POLYETHYLENE GLYCOL 6000 AND 0.1 M CITRATE BUFFER PH 5.0
Crystal Properties Matthews coefficient Solvent content 3.4 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.57 α = 107.3 b = 66.79 β = 93.55 c = 77.35 γ = 100.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS MIRRORS 2012-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 62 98.5 0.11 12.1 5.3 43115 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.28 2.34 97.6 0.82 2 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.28 73.26 40697 2171 97.92 0.19015 0.1886 0.1918 0.21939 0.2223 RANDOM 48.901
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -1.68 -0.71 0.35 -0.29 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.026 r_dihedral_angle_4_deg 16.888 r_dihedral_angle_3_deg 15.238 r_dihedral_angle_1_deg 6.722 r_mcangle_it 3.876 r_scbond_it 2.347 r_mcbond_it 2.216 r_mcbond_other 2.212 r_angle_refined_deg 1.617 r_angle_other_deg 1.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.026 r_dihedral_angle_4_deg 16.888 r_dihedral_angle_3_deg 15.238 r_dihedral_angle_1_deg 6.722 r_mcangle_it 3.876 r_scbond_it 2.347 r_mcbond_it 2.216 r_mcbond_other 2.212 r_angle_refined_deg 1.617 r_angle_other_deg 1.243 r_chiral_restr 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5046 Nucleic Acid Atoms Solvent Atoms 338 Heterogen Atoms 145
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling autoSHARP phasing