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sulfur SAD phasing of Cdc23Nterm: data collection with a tailored X- ray beam size at 2.69 A wavelength (4.6 keV)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 CRYSTALLIZATION DETAILS AS PER 3ZN3
Crystal Properties Matthews coefficient Solvent content 2.62 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.249 α = 90 b = 61.249 β = 90 c = 151.559 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 61.25 99.7 0.11 30.1 27.8 282255 4.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 98 0.72 4.8 17.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 3.1 61.25 9615 510 99.73 0.19046 0.18689 0.1981 0.25963 0.2573 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.573 r_dihedral_angle_3_deg 17.78 r_dihedral_angle_4_deg 17.339 r_long_range_B_refined 12.671 r_long_range_B_other 12.671 r_scangle_other 8.897 r_mcangle_it 7.607 r_mcangle_other 7.607 r_dihedral_angle_1_deg 6.497 r_scbond_it 5.694
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.573 r_dihedral_angle_3_deg 17.78 r_dihedral_angle_4_deg 17.339 r_long_range_B_refined 12.671 r_long_range_B_other 12.671 r_scangle_other 8.897 r_mcangle_it 7.607 r_mcangle_other 7.607 r_dihedral_angle_1_deg 6.497 r_scbond_it 5.694 r_scbond_other 5.682 r_mcbond_it 5.099 r_mcbond_other 5.096 r_angle_other_deg 1.451 r_angle_refined_deg 1.397 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3859 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXD phasing