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Crystal structure of the mid, cap-binding, mid-link and 627 domains from avian influenza A virus polymerase PB2 subunit bound to M7GTP H32 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WSB PDB ENTRIES 4WSB 4CB4 3KC6 experimental model PDB 4CB4 PDB ENTRIES 4WSB 4CB4 3KC6 experimental model PDB 3KC6 PDB ENTRIES 4WSB 4CB4 3KC6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 0.1 M TRI-SODIUM CITRATE PH 5.8 AND 1 M AMMONIUM DI-HYDROGEN PHOSPHATE
Crystal Properties Matthews coefficient Solvent content 3.1 60.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.05 α = 90 b = 123.05 β = 90 c = 229.86 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-01-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 50 99.9 0.39 8.21 10.8 11351
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.3 100 1.5 2.02 10.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 4WSB 4CB4 3KC6 3.1 96.68 11937 513 99.91 0.27669 0.27572 0.2776 0.29869 0.3097 RANDOM 69.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.59 0.79 1.59 -5.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.516 r_dihedral_angle_3_deg 13.347 r_dihedral_angle_4_deg 11.684 r_dihedral_angle_1_deg 4.514 r_mcangle_it 1.397 r_angle_refined_deg 1.047 r_angle_other_deg 0.816 r_mcbond_it 0.759 r_mcbond_other 0.758 r_scbond_it 0.556
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.516 r_dihedral_angle_3_deg 13.347 r_dihedral_angle_4_deg 11.684 r_dihedral_angle_1_deg 4.514 r_mcangle_it 1.397 r_angle_refined_deg 1.047 r_angle_other_deg 0.816 r_mcbond_it 0.759 r_mcbond_other 0.758 r_scbond_it 0.556 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3347 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing