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Crystal Structure of PfCyRPA in complex with an invasion-inhibitory antibody Fab.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EZI 5ezi, 5ezn experimental model PDB 5EZN 5ezi, 5ezn
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1 M sodium citrate pH 5.5, 17 % PEG 5000 MME, 0.2 M NDSB-201
Crystal Properties Matthews coefficient Solvent content 2.9 57.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.801 α = 90 b = 44.681 β = 108.03 c = 121.336 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.63 43 99.1 0.497 0.595 0.921 2.63 3.3 11401 -3 60.184
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.63 3.72 98.7 2.673 3.181 0.35 0.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5ezi, 5ezn 3.63 43 1.33 11357 544 99 0.2763 0.2737 0.2817 0.33 0.323 70.7961
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5995 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 38
Software Software Software Name Purpose XSCALE data scaling PDB_EXTRACT data extraction PHENIX refinement XDS data reduction PHASER phasing