5EPW

C-Terminal Domain Of Human Coronavirus Nl63 Nucleocapsid Protein


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82980.1 M PCTP pH 8.0, 25% PEG 1500
Crystal Properties
Matthews coefficientSolvent content
2.1141.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.29α = 90
b = 68.29β = 90
c = 92.494γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-07-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I230.918409DiamondI23

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.549.831000.08515.310.239989139167
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.581000.84139.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.549.8337156196199.990.170080.168570.19768RANDOM21.307
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.330.170.33-1.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.45
r_dihedral_angle_4_deg27.195
r_dihedral_angle_3_deg13.956
r_dihedral_angle_1_deg6.961
r_long_range_B_refined5.935
r_long_range_B_other5.831
r_scangle_other4.742
r_scbond_it3.208
r_scbond_other3.2
r_mcangle_it3.193
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.45
r_dihedral_angle_4_deg27.195
r_dihedral_angle_3_deg13.956
r_dihedral_angle_1_deg6.961
r_long_range_B_refined5.935
r_long_range_B_other5.831
r_scangle_other4.742
r_scbond_it3.208
r_scbond_other3.2
r_mcangle_it3.193
r_mcangle_other3.192
r_angle_refined_deg2.395
r_mcbond_it2.301
r_mcbond_other2.301
r_angle_other_deg1.198
r_chiral_restr0.158
r_bond_refined_d0.027
r_gen_planes_refined0.013
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1695
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing