☰ Navigation Tabs
Structure of the KH-QUA2 domain of T-STAR in complex with AAUAAU RNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 Imidazole, PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.25 45.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.38 α = 90 b = 45.56 β = 90 c = 151.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97949 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 45.56 100 0.081 0.024 0.998 21.2 12.6 13783
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 0.921 0.267 0.869 3.2 12.8 995
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 43.68 13046 687 99.96 0.2294 0.2273 0.2285 0.2694 0.2722 RANDOM 56.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.96 2.68 -5.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 18.328 r_dihedral_angle_3_deg 14.908 r_dihedral_angle_1_deg 6.984 r_mcangle_it 4.622 r_mcbond_other 3.443 r_mcbond_it 3.441 r_angle_refined_deg 1.816 r_angle_other_deg 1.454 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.715 r_dihedral_angle_4_deg 18.328 r_dihedral_angle_3_deg 14.908 r_dihedral_angle_1_deg 6.984 r_mcangle_it 4.622 r_mcbond_other 3.443 r_mcbond_it 3.441 r_angle_refined_deg 1.816 r_angle_other_deg 1.454 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1800 Nucleic Acid Atoms 106 Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing xia2 data reduction