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Mycobacterium tuberculosis dUTPase G143STOP mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HZA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.5 M ammonium sulfate, 0.1M Tris/HCl, 12% glycerol
Crystal Properties Matthews coefficient Solvent content 2.15 42.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.78 α = 90 b = 54.78 β = 90 c = 84.079 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8729 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 26.05 99.1 0.028 21.23 3.3 34842
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.344 99.27 1.95 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3HZA 1.3 26.04 33008 1813 99.1 0.12441 0.12267 0.1235 0.15679 0.1601 RANDOM 21.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.469 r_sphericity_free 27.47 r_dihedral_angle_4_deg 18.487 r_sphericity_bonded 16.086 r_dihedral_angle_3_deg 10.289 r_mcangle_other 7.404 r_mcangle_it 7.339 r_long_range_B_other 7.146 r_long_range_B_refined 7.14 r_dihedral_angle_1_deg 6.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.469 r_sphericity_free 27.47 r_dihedral_angle_4_deg 18.487 r_sphericity_bonded 16.086 r_dihedral_angle_3_deg 10.289 r_mcangle_other 7.404 r_mcangle_it 7.339 r_long_range_B_other 7.146 r_long_range_B_refined 7.14 r_dihedral_angle_1_deg 6.72 r_mcbond_other 5.712 r_mcbond_it 5.658 r_scangle_other 5.17 r_rigid_bond_restr 5.038 r_scbond_it 4.511 r_scbond_other 4.495 r_angle_refined_deg 1.899 r_angle_other_deg 1.249 r_chiral_restr 0.12 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1050 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling Coot model building MOLREP phasing