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Canarypox virus resolvase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KCF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 8.5 295 Crystals generally appeared after one week and continued to grow for another week to typical dimensions of 0.1 x 0.1 x 0.5 mm
Crystal Properties Matthews coefficient Solvent content 3.35 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.117 α = 90 b = 89.117 β = 90 c = 117.945 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97918 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 89.12 99.7 0.098 0.042 0.999 14.5 6.3 18653
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.51 99.9 1.917 0.804 0.611 1.4 6.4 1915
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1KCF 2.6 50 1363 12681 624 83.3 0.2234 0.2365 0.2643 0.2735 RANDOM 65.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 11.845 11.845 -23.689
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.879 c_mcangle_it 2.411 c_scbond_it 1.821 c_mcbond_it 1.38
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2112 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 12
Software Software Software Name Purpose CNS refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing REFMAC refinement