5E5P

Wild type I-SmaMI in the space group of C121


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.529820% PEG8K, HEPES
Crystal Properties
Matthews coefficientSolvent content
2.6553.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 148.327α = 90
b = 58.23β = 96.08
c = 42.046γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 702013-09-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6427.198.50.05223.7104911121.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.642.73870.1497.53.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4LOX2.6527.1987549598.740.179190.175210.2646RANDOM33.103
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.341.460.99-1.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.844
r_dihedral_angle_4_deg18.934
r_dihedral_angle_3_deg18.041
r_dihedral_angle_1_deg8.206
r_long_range_B_refined3.604
r_long_range_B_other3.603
r_mcangle_it2.284
r_mcangle_other2.283
r_angle_refined_deg2.105
r_scangle_other1.782
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.844
r_dihedral_angle_4_deg18.934
r_dihedral_angle_3_deg18.041
r_dihedral_angle_1_deg8.206
r_long_range_B_refined3.604
r_long_range_B_other3.603
r_mcangle_it2.284
r_mcangle_other2.283
r_angle_refined_deg2.105
r_scangle_other1.782
r_mcbond_it1.283
r_mcbond_other1.282
r_angle_other_deg1.098
r_scbond_it0.997
r_scbond_other0.997
r_chiral_restr0.117
r_bond_refined_d0.019
r_gen_planes_refined0.009
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2357
Nucleic Acid Atoms
Solvent Atoms84
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing