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Crystal structure of CARM1, sinefungin, and PABP1 peptide (R455)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.2 M Ammonium Sulfate, 0.1 M Tris pH 8.5, 18% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.38 48.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.002 α = 90 b = 98.322 β = 90 c = 208.152 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9537 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 99 0.103 14.9 7.4 110682
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2.08 97 0.77 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.93 45.99 109335 5771 99.07 0.1979 0.1958 0.2015 0.238 0.2425 RANDOM 30.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.28 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.904 r_dihedral_angle_4_deg 16.885 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_1_deg 6.08 r_mcangle_it 2.551 r_mcbond_it 1.661 r_mcbond_other 1.661 r_angle_refined_deg 1.372 r_angle_other_deg 0.792 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.904 r_dihedral_angle_4_deg 16.885 r_dihedral_angle_3_deg 13.825 r_dihedral_angle_1_deg 6.08 r_mcangle_it 2.551 r_mcbond_it 1.661 r_mcbond_other 1.661 r_angle_refined_deg 1.372 r_angle_other_deg 0.792 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_bond_other_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11313 Nucleic Acid Atoms Solvent Atoms 490 Heterogen Atoms 132
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction