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Human PPARgamma ligand binding dmain in complex with SR1664
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 297 2.2 M sodium malonate pH7.0
Crystal Properties Matthews coefficient Solvent content 2.66 53.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.076 α = 90 b = 130.871 β = 90 c = 53.063 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2014-05-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.9 37.6 4.6 19337
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.29 100 4.58 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 30 18333 975 99.16 0.20735 0.20579 0.23825 0.2499 RANDOM 65.194
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.23 -2.86 4.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.61 r_dihedral_angle_4_deg 19.849 r_dihedral_angle_3_deg 14.584 r_long_range_B_refined 11.382 r_long_range_B_other 11.377 r_scangle_other 8.205 r_mcangle_it 6.644 r_mcangle_other 6.642 r_dihedral_angle_1_deg 5.255 r_scbond_it 5.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.61 r_dihedral_angle_4_deg 19.849 r_dihedral_angle_3_deg 14.584 r_long_range_B_refined 11.382 r_long_range_B_other 11.377 r_scangle_other 8.205 r_mcangle_it 6.644 r_mcangle_other 6.642 r_dihedral_angle_1_deg 5.255 r_scbond_it 5.124 r_scbond_other 5.122 r_mcbond_it 4.462 r_mcbond_other 4.462 r_angle_refined_deg 1.491 r_angle_other_deg 0.971 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2264 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-2000 data scaling MOLREP phasing