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Aurora A Kinase in Complex with ATP in Space Group P6122
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 292 100 mM HEPES pH 7.4, 200 mM magnesium sulfate, 2-20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.66 53.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.61 α = 90 b = 81.61 β = 90 c = 166.45 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9184 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 70.68 100 0.089 17.9 18.4 19152
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.19 100 1.773 2 19.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3FDN 2.13 70.68 18123 965 99.99 0.20862 0.20592 0.2186 0.26163 0.2663 RANDOM 59.809
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.06 0.12 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.21 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 18.593 r_long_range_B_refined 10.525 r_long_range_B_other 10.523 r_scangle_other 8.678 r_dihedral_angle_1_deg 6.827 r_mcangle_it 6.655 r_mcangle_other 6.654 r_scbond_it 6.058
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.21 r_dihedral_angle_4_deg 18.811 r_dihedral_angle_3_deg 18.593 r_long_range_B_refined 10.525 r_long_range_B_other 10.523 r_scangle_other 8.678 r_dihedral_angle_1_deg 6.827 r_mcangle_it 6.655 r_mcangle_other 6.654 r_scbond_it 6.058 r_scbond_other 6.055 r_mcbond_it 4.939 r_mcbond_other 4.931 r_angle_refined_deg 1.981 r_angle_other_deg 1.044 r_chiral_restr 0.097 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2120 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PHASER phasing XDS data reduction XDS data scaling