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Aurora A Kinase in Complex with AA30 and JNJ-7706621 in Space Group P6122
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 292 100 mM HEPES pH 7.4, 200 mM magnesium sulfate, 2-20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.82 56.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.71 α = 90 b = 83.71 β = 90 c = 166.229 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9184 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.534 72.49 100 0.067 0.067 24.7 18.3 12138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.534 2.542 100 1.23 1.23 2.3 19.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3FDN 2.534 54.63 11477 605 99.98 0.22093 0.21795 0.2295 0.27794 0.2948 RANDOM 87.418
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.08 -0.15 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.984 r_dihedral_angle_4_deg 19.628 r_dihedral_angle_3_deg 19.088 r_long_range_B_refined 15.845 r_long_range_B_other 15.845 r_scangle_other 11.77 r_mcangle_other 10.029 r_mcangle_it 10.026 r_scbond_it 8.162 r_scbond_other 8.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.984 r_dihedral_angle_4_deg 19.628 r_dihedral_angle_3_deg 19.088 r_long_range_B_refined 15.845 r_long_range_B_other 15.845 r_scangle_other 11.77 r_mcangle_other 10.029 r_mcangle_it 10.026 r_scbond_it 8.162 r_scbond_other 8.16 r_mcbond_it 7.658 r_mcbond_other 7.613 r_dihedral_angle_1_deg 5.371 r_angle_refined_deg 1.901 r_angle_other_deg 1.088 r_chiral_restr 0.098 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2108 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms 47
Software Software Software Name Purpose XDS data reduction MOLREP phasing Aimless data scaling REFMAC refinement autoPROC data reduction