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Aurora A Kinase in Complex with AA30 and ATP in Space Group P6122
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 292 100 mM HEPES pH 7.4, 200 mM magnesium sulphate, 2-20 PEG3350
Crystal Properties Matthews coefficient Solvent content 2.58 52.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.26 α = 90 b = 83.26 β = 90 c = 163.85 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9184 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 72.11 100 0.086 18.7 18.1 12898 84.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.52 100 2.149 1.6 19
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3FDN 2.46 72.11 12179 667 99.98 0.2246 0.22133 0.2228 0.28495 0.2865 RANDOM 80.765
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.03 -0.05 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_dihedral_angle_4_deg 20.891 r_dihedral_angle_3_deg 19.264 r_long_range_B_refined 12.739 r_long_range_B_other 12.739 r_scangle_other 9.913 r_mcangle_it 9.174 r_mcangle_other 9.17 r_scbond_it 7.787 r_scbond_other 7.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.606 r_dihedral_angle_4_deg 20.891 r_dihedral_angle_3_deg 19.264 r_long_range_B_refined 12.739 r_long_range_B_other 12.739 r_scangle_other 9.913 r_mcangle_it 9.174 r_mcangle_other 9.17 r_scbond_it 7.787 r_scbond_other 7.785 r_mcbond_it 7.69 r_mcbond_other 7.689 r_dihedral_angle_1_deg 5.872 r_angle_refined_deg 1.903 r_angle_other_deg 1.114 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2162 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data scaling PHASER phasing XDS data reduction Aimless data scaling