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Structure of the parental state of GAF3 from Slr1393 of Synechocystis sp. PCC6803 (in vivo assembled protein/chromophore)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 285 0.02 M Tris pH 7.0, 0.1 M sodium chloride, 7.7 % (w/v) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.38 48.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.12 α = 90 b = 63.12 β = 90 c = 118.83 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97916 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.96 99.7 0.056 19.19 6.63 22947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.91 99 0.301 5.42 6.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 19.96 21860 1039 99.48 0.16585 0.16431 0.19902 0.2208 RANDOM 27.946
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.319 r_dihedral_angle_4_deg 20.042 r_dihedral_angle_3_deg 12.336 r_long_range_B_refined 7.58 r_long_range_B_other 7.578 r_dihedral_angle_1_deg 6.711 r_scangle_other 5.776 r_mcangle_other 4.17 r_mcangle_it 4.163 r_scbond_it 3.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.319 r_dihedral_angle_4_deg 20.042 r_dihedral_angle_3_deg 12.336 r_long_range_B_refined 7.58 r_long_range_B_other 7.578 r_dihedral_angle_1_deg 6.711 r_scangle_other 5.776 r_mcangle_other 4.17 r_mcangle_it 4.163 r_scbond_it 3.907 r_scbond_other 3.905 r_mcbond_it 3.05 r_mcbond_other 3.037 r_angle_refined_deg 2.428 r_angle_other_deg 1.032 r_chiral_restr 0.144 r_bond_refined_d 0.022 r_gen_planes_other 0.017 r_gen_planes_refined 0.014 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1299 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling