☰ Navigation Tabs
Crystal structure of glyoxalase I from Zea mays
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.7 298 4M SODIUM FORMATE, 1% PEG 4000, PH 9.7
Crystal Properties Matthews coefficient Solvent content 2.65 53.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.69 α = 90 b = 90.69 β = 90 c = 74.713 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.12709 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 38.8 99.7 10 4.7 36195
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.73 38.8 34334 1843 99.67 0.16802 0.16614 0.1762 0.20213 0.2104 RANDOM 30.734
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.79 0.39 0.79 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.437 r_sphericity_bonded 27.626 r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 13.348 r_long_range_B_refined 7.167 r_long_range_B_other 7.13 r_dihedral_angle_1_deg 6.939 r_scangle_other 5.682 r_scbond_it 3.994 r_scbond_other 3.993
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.437 r_sphericity_bonded 27.626 r_dihedral_angle_4_deg 15.735 r_dihedral_angle_3_deg 13.348 r_long_range_B_refined 7.167 r_long_range_B_other 7.13 r_dihedral_angle_1_deg 6.939 r_scangle_other 5.682 r_scbond_it 3.994 r_scbond_other 3.993 r_mcangle_it 3.98 r_mcangle_other 3.979 r_mcbond_it 3.047 r_mcbond_other 3.046 r_angle_refined_deg 2.026 r_angle_other_deg 0.953 r_chiral_restr 0.125 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2201 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing