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IsdB NEAT1 bound by clone D4-10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 290 17% PEG 3350
0.2M Ammonium Citrate Tri
Crystal Properties Matthews coefficient Solvent content 3.08 60.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.292 α = 90 b = 147.005 β = 90 c = 165.045 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 2014-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.987 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.17 24.96 97.9 7.6 3.5 45212
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.17 24.96 45211 2344 97.98 0.23605 0.23342 0.2331 0.28712 0.2854 RANDOM 49.053
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.5 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_4_deg 20.197 r_dihedral_angle_3_deg 17.788 r_dihedral_angle_1_deg 8.017 r_long_range_B_refined 2.586 r_long_range_B_other 2.585 r_angle_refined_deg 1.857 r_mcangle_it 1.594 r_mcangle_other 1.594 r_scangle_other 1.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.921 r_dihedral_angle_4_deg 20.197 r_dihedral_angle_3_deg 17.788 r_dihedral_angle_1_deg 8.017 r_long_range_B_refined 2.586 r_long_range_B_other 2.585 r_angle_refined_deg 1.857 r_mcangle_it 1.594 r_mcangle_other 1.594 r_scangle_other 1.204 r_angle_other_deg 1.105 r_mcbond_it 0.891 r_mcbond_other 0.891 r_scbond_it 0.649 r_scbond_other 0.649 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15704 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing