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CDK2/Cyclin A covalent complex with 6-(cyclohexylmethoxy)-N-(4-(vinylsulfonyl)phenyl)-9H-purin-2-amine (NU6300)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 Protein at 5 mg per ml.
0.6 to 0.8 M KCl, 0.9 to 1.2 M (NH4)2SO4, and 100 mM HEPES (pH 7.0)
Crystal Properties Matthews coefficient Solvent content 2.9 57.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.286 α = 90 b = 135.289 β = 90 c = 148.673 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 74.34 99.9 0.181 0.17 8.9 7.5 101717
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 99.1 4.328 0.5 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1H1S 2 74.34 101635 4914 99.85 0.2281 0.2267 0.2269 0.2548 0.2549 RANDOM 52.6654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.32 1.58 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.001 r_dihedral_angle_3_deg 17.062 r_dihedral_angle_4_deg 15.032 r_dihedral_angle_1_deg 6.514 r_mcangle_it 6.122 r_scbond_it 4.187 r_mcbond_it 3.96 r_angle_refined_deg 1.742 r_chiral_restr 0.106 r_bond_refined_d 0.013
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.001 r_dihedral_angle_3_deg 17.062 r_dihedral_angle_4_deg 15.032 r_dihedral_angle_1_deg 6.514 r_mcangle_it 6.122 r_scbond_it 4.187 r_mcbond_it 3.96 r_angle_refined_deg 1.742 r_chiral_restr 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8947 Nucleic Acid Atoms Solvent Atoms 492 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling PHASER phasing