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GlgE isoform 1 from Streptomyces coelicolor E423A mutant soaked in maltoheptaose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CN6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 NULL
Crystal Properties Matthews coefficient Solvent content 3.39 63.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.08 α = 90 b = 114.08 β = 90 c = 314.14 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 62.83 99.9 0.069 0.016 0.999 27.6 18.4 92902 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99.4 1.026 0.245 0.868 3.5 17.9 6680
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4CN6 2.3 62.83 88145 4636 99.84 0.1821 0.1807 0.1844 0.2091 0.2118 RANDOM 59.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 1.52 -3.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.673 r_dihedral_angle_4_deg 17.073 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.054 r_mcangle_it 1.669 r_angle_refined_deg 1.442 r_angle_other_deg 1.073 r_mcbond_it 0.993 r_mcbond_other 0.993 r_chiral_restr 0.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.673 r_dihedral_angle_4_deg 17.073 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.054 r_mcangle_it 1.669 r_angle_refined_deg 1.442 r_angle_other_deg 1.073 r_mcbond_it 0.993 r_mcbond_other 0.993 r_chiral_restr 0.078 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10150 Nucleic Acid Atoms Solvent Atoms 484 Heterogen Atoms 268
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction