☰ Navigation Tabs
X-ray crystal structure of SeMet human Sestrin2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1 M MES
1.15 M sodium malonate
Crystal Properties Matthews coefficient Solvent content 3.79 67.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 292.68 α = 90 b = 292.68 β = 90 c = 292.68 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 0.97879 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 44.12 99.9 0.305 28.5 88.6 52390
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.59 100 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 3.5 44.12 49798 2592 99.91 0.23715 0.23538 0.2404 0.27194 0.2727 RANDOM 103.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.165 r_long_range_B_refined 20.022 r_long_range_B_other 20.022 r_dihedral_angle_3_deg 17.301 r_dihedral_angle_4_deg 17.075 r_mcangle_it 16.64 r_mcangle_other 16.64 r_scangle_other 15.344 r_mcbond_it 13.321 r_mcbond_other 13.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.165 r_long_range_B_refined 20.022 r_long_range_B_other 20.022 r_dihedral_angle_3_deg 17.301 r_dihedral_angle_4_deg 17.075 r_mcangle_it 16.64 r_mcangle_other 16.64 r_scangle_other 15.344 r_mcbond_it 13.321 r_mcbond_other 13.321 r_scbond_it 10.843 r_scbond_other 10.843 r_dihedral_angle_1_deg 6.751 r_angle_other_deg 1.888 r_angle_refined_deg 1.824 r_chiral_restr 0.095 r_bond_refined_d 0.019 r_bond_other_d 0.015 r_gen_planes_refined 0.011 r_gen_planes_other 0.011 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15032 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHENIX phasing