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Disproportionating enzyme 1 from Arabidopsis - acarbose soak
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X1N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1 microliter of 9% PEG2000 MME in 0.1 M HEPES-NaOH, pH 8.0 was added to 1 microliter of protein at a concentration of 10 mg/ml in 20 mM HEPES-NaOH, pH 7.5, 150 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.62 52.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.79 α = 64.59 b = 73.69 β = 69.99 c = 79.35 γ = 66.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-09-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 63.67 89.7 0.092 0.051 0.997 14.3 4.2 72219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 87 1.019 0.57 0.636 1.6 4.1 5162
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1X1N 2.05 63.67 68519 3689 89.67 0.1883 0.1871 0.2102 0.1939 RANDOM 43.944
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.68 0.29 0.8 -1.32 -1.2 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.616 r_dihedral_angle_4_deg 17.098 r_dihedral_angle_3_deg 13.629 r_dihedral_angle_1_deg 6.243 r_mcangle_it 1.66 r_angle_refined_deg 1.493 r_angle_other_deg 1.21 r_mcbond_it 1.041 r_mcbond_other 1.04 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.616 r_dihedral_angle_4_deg 17.098 r_dihedral_angle_3_deg 13.629 r_dihedral_angle_1_deg 6.243 r_mcangle_it 1.66 r_angle_refined_deg 1.493 r_angle_other_deg 1.21 r_mcbond_it 1.041 r_mcbond_other 1.04 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7997 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 199
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction PHASER phasing XDS data reduction