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E10 in complex with CXCL13
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GV3 E10 and 3GV3/2R3Z/4HSV/3IL8 experimental model PDB 2R3Z E10 and 3GV3/2R3Z/4HSV/3IL8 experimental model PDB 4HSV E10 and 3GV3/2R3Z/4HSV/3IL8 experimental model PDB 3IL8 E10 and 3GV3/2R3Z/4HSV/3IL8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 291 100 mM KH2PO4, 100 mM NaH2PO4, 100 mM MES pH 6, 2000 mM NaCl
Crystal Properties Matthews coefficient Solvent content 2.87 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125 α = 90 b = 125 β = 90 c = 98 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 PIXEL PSI PILATUS 6M 2013-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 100 0.07 30.4 11.6 34874 59.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 100 0.605 3.6 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT E10 and 3GV3/2R3Z/4HSV/3IL8 2.4 40.92 34852 1751 99.85 0.2495 0.2481 0.2837 0.2746 0.3136 RANDOM 82.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.6629 -4.6629 9.3259
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.3 t_omega_torsion 2.48 t_angle_deg 1.06 t_bond_d 0.008 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.3 t_omega_torsion 2.48 t_angle_deg 1.06 t_bond_d 0.008 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4599 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 4
Software Software Software Name Purpose BUSTER refinement SCALA data scaling PHASER phasing