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AbyA1 - tetronic acid condensing enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 in 12.5 % w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD, 0.2M 1,6-hexanediol, 0.2 M 1-butanol, 0.2 M (RS)-1,2-propanediol, 0.2 M 2-propanol, 0.2 M 1,4-butanediol, 0.2 M 1,3-propanediol, 0.1 M MOPS/HEPES-Na
Crystal Properties Matthews coefficient Solvent content 2.49 50.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.71 α = 90 b = 58.69 β = 95.43 c = 128.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M-F 2014-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 55.67 100 10.6 6.1 122145
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.8 55.67 116115 6050 99.98 0.18717 0.18542 0.1976 0.22125 0.1986 RANDOM 16.493
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 0.18 0.54 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.383 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 11.439 r_dihedral_angle_1_deg 6.514 r_long_range_B_refined 5.635 r_long_range_B_other 5.55 r_scangle_other 3.96 r_scbond_it 2.618 r_scbond_other 2.618 r_mcangle_it 2.461
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.383 r_dihedral_angle_4_deg 18.465 r_dihedral_angle_3_deg 11.439 r_dihedral_angle_1_deg 6.514 r_long_range_B_refined 5.635 r_long_range_B_other 5.55 r_scangle_other 3.96 r_scbond_it 2.618 r_scbond_other 2.618 r_mcangle_it 2.461 r_mcangle_other 2.461 r_angle_refined_deg 1.933 r_mcbond_it 1.675 r_mcbond_other 1.675 r_angle_other_deg 1.047 r_chiral_restr 0.119 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9122 Nucleic Acid Atoms Solvent Atoms 480 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing