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Crystal structure of metallo-beta-lactamase IMP-18 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 283 sodium citrate, polyethylene glycol 4000, ethylene glycol, Strontium chloride
Crystal Properties Matthews coefficient Solvent content 3.76 67.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.55 α = 90 b = 87.38 β = 90 c = 105.75 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2013-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.00 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 36.82 98.7 6.6 14.3 50965
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2 30 46813 2498 98.77 0.20229 0.20068 0.2108 0.23199 0.237 RANDOM 27.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.58 -1.01 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.864 r_dihedral_angle_4_deg 18.842 r_dihedral_angle_3_deg 15.329 r_dihedral_angle_1_deg 6.242 r_long_range_B_refined 4.433 r_long_range_B_other 4.417 r_scangle_other 3.179 r_mcangle_it 2.232 r_mcangle_other 2.232 r_scbond_other 1.959
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.864 r_dihedral_angle_4_deg 18.842 r_dihedral_angle_3_deg 15.329 r_dihedral_angle_1_deg 6.242 r_long_range_B_refined 4.433 r_long_range_B_other 4.417 r_scangle_other 3.179 r_mcangle_it 2.232 r_mcangle_other 2.232 r_scbond_other 1.959 r_scbond_it 1.958 r_mcbond_it 1.461 r_mcbond_other 1.461 r_angle_refined_deg 1.317 r_angle_other_deg 0.796 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3384 Nucleic Acid Atoms Solvent Atoms 162 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing