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Bovine heart cytochrome c oxidase in the fully oxidized state at 1.5 angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6.8 277 PEG 4000, Sodium phosphate
Crystal Properties Matthews coefficient Solvent content 4.03 69.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 181.938 α = 90 b = 204.4 β = 90 c = 177.896 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 50 CCD RAYONIX MX225HE 2010-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 200 100 0.107 32.7 14.9 1041861
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.52 100 3.9 14.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 40 976020 51654 98.33 0.14998 0.1488 0.1506 0.1719 0.1732 RANDOM 38.012
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 2.77 -2.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.982 r_sphericity_bonded 22.194 r_dihedral_angle_4_deg 15.933 r_dihedral_angle_3_deg 15.175 r_long_range_B_refined 10.915 r_rigid_bond_restr 10.415 r_dihedral_angle_1_deg 6.509 r_scbond_it 6.302 r_mcangle_it 4.834 r_mcbond_it 3.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.982 r_sphericity_bonded 22.194 r_dihedral_angle_4_deg 15.933 r_dihedral_angle_3_deg 15.175 r_long_range_B_refined 10.915 r_rigid_bond_restr 10.415 r_dihedral_angle_1_deg 6.509 r_scbond_it 6.302 r_mcangle_it 4.834 r_mcbond_it 3.65 r_angle_refined_deg 3.569 r_chiral_restr 0.278 r_bond_refined_d 0.04 r_gen_planes_refined 0.028 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28506 Nucleic Acid Atoms Solvent Atoms 3599 Heterogen Atoms 2230
Software Software Software Name Purpose REFMAC refinement DENZO data processing SCALEPACK data scaling