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Crystal structure of aqua-cobalt(III) tetradehydrocorrin in the heme pocket of horse heart myoglobin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 298 ammonium sulfate, Tris-HCl, trehalose
Crystal Properties Matthews coefficient Solvent content 1.8 31.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.786 α = 90 b = 28.837 β = 106.17 c = 63.324 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2012-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.90000 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 97.6 0.058 20.4 3.66 37167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 97.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.2 50 35357 1804 97.6 0.12365 0.12141 0.1216 0.16824 0.1689 RANDOM 17.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.4 -0.46 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.953 r_sphericity_free 27.698 r_dihedral_angle_3_deg 13.333 r_sphericity_bonded 10.416 r_rigid_bond_restr 5.974 r_dihedral_angle_1_deg 5.32 r_dihedral_angle_4_deg 4.73 r_scangle_other 4.526 r_scbond_it 4.264 r_scbond_other 4.264
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.953 r_sphericity_free 27.698 r_dihedral_angle_3_deg 13.333 r_sphericity_bonded 10.416 r_rigid_bond_restr 5.974 r_dihedral_angle_1_deg 5.32 r_dihedral_angle_4_deg 4.73 r_scangle_other 4.526 r_scbond_it 4.264 r_scbond_other 4.264 r_long_range_B_refined 4.182 r_long_range_B_other 3.695 r_angle_refined_deg 3.248 r_mcangle_other 2.417 r_mcangle_it 2.386 r_mcbond_it 2.028 r_mcbond_other 1.684 r_angle_other_deg 1.284 r_chiral_restr 0.184 r_bond_refined_d 0.033 r_gen_planes_refined 0.019 r_gen_planes_other 0.009 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1199 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction Coot model building PHASER phasing