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Crystal structure of AtTTM3 in complex with tripolyphosphate and manganese ion (form A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 2.5 M NACL, 0.1 M SODIUM CITRATE PH 5.0
Crystal Properties Matthews coefficient Solvent content 3.47 64.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.273 α = 90 b = 136.273 β = 90 c = 145.485 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2013-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000, 1.802090 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 48.18 98 0.09 19.13 11.73 42478 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.17 88.1 0.74 2.2 6.47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.05 48.18 38451 3927 98.35 0.18549 0.18199 0.1854 0.21963 0.2129 RANDOM 35.766
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 -0.64 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.982 r_sphericity_free 23.288 r_dihedral_angle_4_deg 15.683 r_dihedral_angle_3_deg 12.326 r_dihedral_angle_1_deg 5.599 r_sphericity_bonded 4.633 r_mcangle_it 1.588 r_scbond_it 1.395 r_mcbond_it 1.235 r_mcbond_other 1.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.982 r_sphericity_free 23.288 r_dihedral_angle_4_deg 15.683 r_dihedral_angle_3_deg 12.326 r_dihedral_angle_1_deg 5.599 r_sphericity_bonded 4.633 r_mcangle_it 1.588 r_scbond_it 1.395 r_mcbond_it 1.235 r_mcbond_other 1.233 r_angle_refined_deg 1.136 r_rigid_bond_restr 0.924 r_angle_other_deg 0.818 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3408 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling