☰ Navigation Tabs
Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes in complex with NAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS, 0.1 M BUFFER SYSTEM 1 (PH 6.5), 30.00% (V/V) EDO_P8K (THESE ARE COMPONENTS OF THE MORPHEUS SCREEN FROM MOLECULAR DIMENSIONS)
Crystal Properties Matthews coefficient Solvent content 2.14 43.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.88 α = 99.55 b = 41.48 β = 93.61 c = 51.26 γ = 92.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2014-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 40.82 97.2 0.15 4.8 2.3 17229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.08 95.2 0.6 1.9 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.03 40.82 16372 856 97.23 0.17843 0.17559 0.2333 0.2501 RANDOM 24.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 -0.44 -0.42 1.2 -0.02 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.594 r_dihedral_angle_3_deg 13.681 r_dihedral_angle_4_deg 12.283 r_dihedral_angle_1_deg 5.171 r_scangle_it 2.789 r_mcangle_it 1.976 r_scbond_it 1.641 r_mcbond_it 1.23 r_mcbond_other 1.215 r_angle_refined_deg 1.181
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.594 r_dihedral_angle_3_deg 13.681 r_dihedral_angle_4_deg 12.283 r_dihedral_angle_1_deg 5.171 r_scangle_it 2.789 r_mcangle_it 1.976 r_scbond_it 1.641 r_mcbond_it 1.23 r_mcbond_other 1.215 r_angle_refined_deg 1.181 r_angle_other_deg 0.734 r_chiral_restr 0.069 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2345 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling autoSHARP phasing