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Crystal structure of the ADP-ribosylating sirtuin (SirTM) from Streptococcus pyogenes in complex with ADP-ribose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 CRYSTALLIZATION CONDITIONS: 0.1 M AMINO ACIDS, 0.1 M BUFFER SYSTEM 1 (PH 6.5), 30.00% (V/V) EDO_P8K (THESE ARE COMPONENTS OF THE MORPHEUS SCREEN FROM MOLECULAR DIMENSIONS)
Crystal Properties Matthews coefficient Solvent content 2.14 43.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.943 α = 99.76 b = 41.521 β = 93.4 c = 51.253 γ = 92.66
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2014-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.35 92.1 0.07 8 2.4 19940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 88.9 0.33 4.5 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.9 50.39 18929 1010 92.08 0.16586 0.16318 0.1732 0.21577 0.2218 RANDOM 14.412
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.14 -0.19 0.55 0.36 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.771 r_dihedral_angle_3_deg 13.459 r_dihedral_angle_4_deg 12.946 r_dihedral_angle_1_deg 5.399 r_scangle_it 2.51 r_mcangle_it 1.809 r_scbond_it 1.476 r_angle_refined_deg 1.446 r_mcbond_it 1.073 r_mcbond_other 1.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.771 r_dihedral_angle_3_deg 13.459 r_dihedral_angle_4_deg 12.946 r_dihedral_angle_1_deg 5.399 r_scangle_it 2.51 r_mcangle_it 1.809 r_scbond_it 1.476 r_angle_refined_deg 1.446 r_mcbond_it 1.073 r_mcbond_other 1.073 r_angle_other_deg 0.797 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2345 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling autoSHARP phasing