5A2X

Crystal structure of mtPAP in complex with CTP


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.2244.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.064α = 90
b = 95.575β = 90
c = 191.613γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray287CCDMARMOSAIC 225 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.3BESSY14.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.14099.90.160.9911.38.2211012
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.271001.160.521.46

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.138.2919971108099.810.214620.212190.25965RANDOM77.393
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.17-1.27-1.9
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.62
r_dihedral_angle_3_deg15.63
r_dihedral_angle_4_deg12.954
r_dihedral_angle_1_deg5.179
r_mcangle_it5.021
r_mcbond_it2.982
r_mcbond_other2.982
r_scbond_it2.859
r_angle_refined_deg1.049
r_angle_other_deg0.822
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.62
r_dihedral_angle_3_deg15.63
r_dihedral_angle_4_deg12.954
r_dihedral_angle_1_deg5.179
r_mcangle_it5.021
r_mcbond_it2.982
r_mcbond_other2.982
r_scbond_it2.859
r_angle_refined_deg1.049
r_angle_other_deg0.822
r_chiral_restr0.055
r_bond_refined_d0.006
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7440
Nucleic Acid Atoms
Solvent Atoms4
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
MOLREPphasing