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SdsA sulfatase triclinic form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CG3 PDB ENTRY 2CG3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 10% PEG 4000, 10% ISOPROPANOL, 100MM LICL, 100 MM SODIUM CITRATE PH 6.
Crystal Properties Matthews coefficient Solvent content 3.32 63.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.9 α = 107.59 b = 86.8 β = 102.96 c = 129.03 γ = 95.59
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2014-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 50 71.8 0.06 15.34 2.97 95678 1.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.46 59.7 0.33 1.65 1.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CG3 2.41 118.77 90647 4958 71.66 0.25624 0.25349 0.2581 0.30701 0.3076 RANDOM 46.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 0.12 -0.35 0.6 -0.19 -1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.006 r_dihedral_angle_4_deg 18.06 r_dihedral_angle_3_deg 16.164 r_dihedral_angle_1_deg 7.792 r_long_range_B_refined 7.318 r_long_range_B_other 7.318 r_mcangle_it 4.792 r_mcangle_other 4.792 r_scangle_other 4.139 r_mcbond_it 2.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.006 r_dihedral_angle_4_deg 18.06 r_dihedral_angle_3_deg 16.164 r_dihedral_angle_1_deg 7.792 r_long_range_B_refined 7.318 r_long_range_B_other 7.318 r_mcangle_it 4.792 r_mcangle_other 4.792 r_scangle_other 4.139 r_mcbond_it 2.954 r_mcbond_other 2.954 r_scbond_it 2.493 r_scbond_other 2.493 r_angle_refined_deg 1.894 r_angle_other_deg 1.111 r_chiral_restr 0.098 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19624 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing