☰ Navigation Tabs
THE CRYSTAL STRUCTURE OF I-DMOI E117A IN COMPLEX WITH ITS TARGET DNA AND IN THE PRESENCE OF 2MM MN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VS8 PDB ENTRY 2VS8
Crystallization Crystal Properties Matthews coefficient Solvent content 2.97 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.928 α = 90 b = 69.77 β = 120.06 c = 106.985 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.22 96.9 0.06 16.7 3.1 120214 2 40.72
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 95.1 0.32 2.8 3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2VS8 2.2 29.22 0.79 120107 6016 88.47 0.1725 0.1706 0.1601 0.2079 0.1646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.1478 -0.0974 10.9474 -7.7996
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.958 f_angle_d 1.237 f_chiral_restr 0.061 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4532 Nucleic Acid Atoms 3057 Solvent Atoms 379 Heterogen Atoms 33
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing