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Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1M MES AT PH6.5,1.2M SODIUMMALONATE
Crystal Properties Matthews coefficient Solvent content 2.4 48.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.517 α = 90 b = 71.517 β = 90 c = 97.4 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 38.25 99.6 0.08 18.21 6.95 32441 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.2 97.2 0.43 2.6 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT NONE 2.1 38.29 30767 1641 99.74 0.16553 0.16302 0.1719 0.21279 0.2191 RANDOM 27.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -0.16 -0.33 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.706 r_dihedral_angle_3_deg 15.831 r_dihedral_angle_4_deg 14.93 r_dihedral_angle_1_deg 7.128 r_angle_refined_deg 2.643 r_mcangle_it 2.144 r_scbond_it 2.093 r_mcbond_it 1.339 r_mcbond_other 1.339 r_angle_other_deg 1.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.706 r_dihedral_angle_3_deg 15.831 r_dihedral_angle_4_deg 14.93 r_dihedral_angle_1_deg 7.128 r_angle_refined_deg 2.643 r_mcangle_it 2.144 r_scbond_it 2.093 r_mcbond_it 1.339 r_mcbond_other 1.339 r_angle_other_deg 1.217 r_chiral_restr 0.154 r_bond_refined_d 0.027 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3272 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 242
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling MOLREP phasing